I think you can run it in conduit, but in this situation, it may in fact not be the best idea. That's all drywall, and that type of Romex IS better, I agree, in used directly behind the drywall. Just eat the drywall repair and be done with it. In any event, he should have used a larger conduit for that wire. There IS a maximum fill requirement for cable to conduit ratios, and from I understand he'd be under that. Made his installation a hell of a lot harder than it needed to be. Or make it easier on yourself and just pull single strand 6 guage wire.
Personally, never been a fan of using metal conduits for high-power electrical applications. Especially when PVC is readily available and has better impact resistance, etc. and is waterproof since the seams are glued.